#
#	archived
#
#./genomic_interval_size.py --one_based_inclusive -L logs/genomic_interval_size.log -v -i /data/mus/visitors/lg/ziang_BAC/nodbac.reg           
#./genomic_interval_size.py --one_based_inclusive -L logs/genomic_interval_size.log -v -i data/regions/nod_700bp_alignable.regions             
#./genomic_interval_size.py --one_based_inclusive -L logs/genomic_interval_size.log -v -i data/regions/nod_700bp_alignable_callable.regions    
#./genomic_interval_size.py --one_based_inclusive -L logs/genomic_interval_size.log -v -i data/regions/nod_bac_uncallable.regions              
#./genomic_interval_size.py --one_based_inclusive -L logs/genomic_interval_size.log -v -i data/regions/nod_bac_callable.regions 	       
#./genomic_interval_size.py --one_based_inclusive -L logs/genomic_interval_size.log -v -i data/regions/nod_bac_callable.no_indels.regions       
#./genomic_interval_size.py --one_based_inclusive -L logs/genomic_interval_size.log -v -i data/regions/nod_bac_callable.no_repeats.regions       
#./genomic_interval_size.py --one_based_inclusive -L logs/genomic_interval_size.log -v -i data/regions/nod_bac_callable.no_repeats_indels.regions       
#./genomic_interval_size.py --one_based_inclusive -L logs/genomic_interval_size.log -v -i /data/mus/visitors/lg/uncallable/NOD.nc              

interval_ops --input1_file '/data/mus/visitors/lg/uncallable/final_uncallable/*.uncallable' -X summarise --contig_sizes_file /data/mus/visitors/lg/ucsc_data/mm9.euchromatin --verbose -L logs/genomic_interval_size.log
interval_ops --input1_file 'data/regions/nod_bac_final_uncallable.regions'                  -X summarise --contig_sizes_file /data/mus/visitors/lg/ucsc_data/mm9.euchromatin --verbose -L logs/genomic_interval_size.log
interval_ops --input1_file 'data/regions/nod_bac_final_callable.regions'                    -X summarise --contig_sizes_file /data/mus/visitors/lg/ucsc_data/mm9.euchromatin --verbose -L logs/genomic_interval_size.log
